I am trying to run Nextflow EAGER pipeline with docker on Ubuntu Jammy Jellyfish. I am the only user on this computer and thus the admin. Everything I've found so far has been a chmod fix but chmod o+w benjamin is not working as it says there is not a file named benjamin. I have found some answers saying to add a line to my Nextflow config but I can't find that file. How do I fix this so the pipeline will run????
The full error is this:
Error executing process > 'makeSeqDict (HBref.fasta)'
Caused by:Process makeSeqDict (HBref.fasta)
terminated with an error exit status (1)
Command executed:
picard -Xmx8192M CreateSequenceDictionary R=HBref.fasta O="HBref.dict"
Command exit status:1
Command output:(empty)
Command error:touch: cannot touch '.command.trace': Permission denied