Hello I want to use trimmomatic on Ubuntu. Even though I run the
$ ls trimmomatic-0.39MANIFEST.MF build.xml lib versionHistory.txtadapters distSrc src
And get results, when I run this code:
trimmomatic PE SRS3773138_1.fastq SRS3773138_2.fastq \ SRS3773138_1.trim.fastq.gz SRS3773138_1un.trim.fastq.gz \ SRS3773138_2.trim.fastq.gz SRS3773138_2un.trim.fastq.gz \ SLIDINGWINDOW:4:20 MINLEN:25 ILLUMINACLIP:NexteraPE-PE.fa:2:40:15
It gives
-bash: trimmomatic: command not found
Could you help me?